研究成果

謝辞の記載についてAcknowledgement remarks

雑誌論文Papers

1. Yonezawa, K., Takahashi, M.,Yatabe, K., Nagatani, Y. and Shimizu, N.
   MOLASS: Software for automatic processing of matrix data obtained from small-angle X-ray scattering and UV-visible spectroscopy combined with size-exclusion chromatography.
   Biophysics Physicobiology , 20 , 1 , e200001 (2023)
   DOI: 10.2142/biophysico.bppb-v20.0001
   B01:計画研究   B01 清水　伸隆  
2. Daisuke Takahashi, Kento Yonezawa, Yuki Okizaki, Jose M. M. Caaveiro, Tadashi Ueda, Atsushi Shimada, Fumio Sakane, Nobutaka Shimizu
   Ca2+-induced structural changes and intramolecular interactions in N-terminal region of diacylglycerol kinase alpha
   Protein Science , 31 , 7 , e4365 (2022)
   DOI: 10.1002/pro.4365
   B01:計画研究   B01 清水　伸隆  
3. Akira Hirata, Keisuke Okada, Kazuaki Yoshii, Hiroyuki Shiraishi, Shinya Saijo, Kento Yonezawa, Nobutaka Shimizu, Hiroyuki Hori
   Structure of tRNA methyltransferase complex of Trm7 and Trm734 reveals a novel binding interface for tRNA recognition.
   Nucleic Acids Research , 47 , 20 , 10942-10955 (2019)
   DOI: 10.1093/nar/gkz856
   プレスリリース: https://www.kek.jp/ja/newsroom/attic/PR20191031.pdf
   B01:計画研究   B01 清水　伸隆  
4. Ite, K., Yonezawa, K., Kitanishi, K., Shimizu, N., and Unno, M.
   Optimal Mutant Model of Human S100A3 Protein Citrullinated at Arg51 by Peptidylarginine Deiminase Type III and Its Solution Structural Properties
   ACS Omega , 5 , 8 , 4032-4042 (2020)
   DOI: 10.1021/acsomega.9b03618
   B01:計画研究   B01 清水　伸隆  
5. Yuma Nagano , Aoi Sugiyama , Madoka Kimoto , Takuya Wakahara , Yasuyo Noguchi , Xinxin Jiang , Shinya Saijo , Nobutaka Shimizu , Nana Yabuno , Min Yao , Paul R. Gooley , Gregory W. Moseley , Takashi Tadokoro , Katsumi Maenaka , Toyoyuki Ose
   The Measles Virus V Protein Binding Site to STAT2 Overlaps That of IRF9
   Journal of Virology , 94 , 17 , e01169 (2020)
   DOI: 10.1128/jvi.01169-20
   B01:計画研究   B01 清水　伸隆  
6. Sachiko Toma-Fukai , Ryota Hibi , Takao Naganuma , Mashito Sakai , Shinya Saijo , Nobutaka Shimizu , Michihiro Matsumoto , Toshiyuki Shimizu
   Crystal structure of GCN5 PCAF N-terminal domain reveals atypical ubiquitin ligase structure
   Journal of Biological Chemistry , 295 , 43 , 14630-14639 (2020)
   DOI: 10.1074/jbc.ra120.013431
   B01:計画研究   B01 清水　伸隆  
7. Karman Virk , Kento Yonezawa , Komal Choukate , Lucky Singh , Nobutaka Shimizu , Barnali Chaudhuri
   K-edge anomalous SAXS for protein solution structure modeling
   Acta Crystallographica Section D Structural Biology , 78 , 2 , 204-211 (2022)
   DOI: 10.1107/s205979832101247x
   B01:計画研究   B01 清水　伸隆  

書籍Books

1. 津本浩平, 前仲勝実（編者）、分担著者
   創薬研究のための相互作用解析パーフェクト : 低中分子・抗体創薬におけるスクリーニング戦略と実例、in silico解析、一歩進んだ分析技術まで
   羊土社 page: 313-322 (2021)
   B01:計画研究   B01 清水　伸隆  

学会発表Presentations, Lectures

1. Nobutaka Shimizu
   Structural state estimation of biological macromolecules in solution using BioSAXS
   蛋白研セミナー：Frontier of Dynamic Structural Biology , ( 2022 , 10 )
   B01:計画研究   B01 清水　伸隆  
2. Nobutaka Shimizu, Keiko Yatabe, Masatsuyo Takahashi, Yasuko Nagatani
   Photon FactoryのBioSAXS測定解析システムの現状
   第36回日本放射光学会年会・放射光科学合同シンポジウム, ( 2023 , 1 )
   B01:計画研究   B01 清水　伸隆  
3. Nobutaka Shimizu, Kento Yonezawa, Yasuko Nagatani, Keiko Yatabe, Masatsuyo Takahashi
   BioSAXS measurement and analysis system at the Photon Factory
   Asia Oceania International Conference on Synchrotron Radiation Instruments 2022, ( 2022 , 11 )
   B01:計画研究   B01 清水　伸隆  
4. Nobutaka Shimizu, Hideki Takagi, Yasuko Nagatani, Takeharu Mori, Keiko Yatabe, Masatsuyo Takahashi, Noriyuki Igarashi
   Upgrade of BioSAXS measurement system at the Photon Factory
   第60回日本生物物理学会年会, ( 2022 , 9 )
   B01:計画研究   B01 清水　伸隆  
5. Kento Yonezawa, Masatuyo Takahashi, Keishi Oyama, Keiko Yatabe, Yasuko Nagatani, Nobutaka Shimizu
   Development of software for automatic processing of matrix data measured with SEC-SAXS/UV-Vis. spectroscopy
   第59回日本生物物理学会年会, ( 2021 , 11 )
   B01:計画研究   B01 清水　伸隆  
6. N. Shimizu, H. Takagi, Y. Nagatani, K. Yonezawa, T. Mori, K. Yatabe, M. Takahashi, K. Oyama, N. Igarashi
   Small-angle X-ray scattering beamlines at the photon factory
   IUCr 2021 - XXV General Assembly and Congress of the International Union of Crystallography, ( 2021 , 8 )
   B01:計画研究   B01 清水　伸隆  
7. 清水伸隆、高木秀彰、永谷康子、米澤健人、大田浩正、森丈晴、 谷田部景子、高橋正剛、西條慎也、鈴木文俊、羽方望、五十嵐教之
   Photon Factory の⼩⾓散乱ビームラインの現状
   第34回日本放射光学会年会・放射光科学合同シンポジウム, ( 2021 , 1 )
   B01:計画研究   B01 清水　伸隆  
8. Kento Yonezawa, Ayako Furukawa, Naruhiko Adachi, Toshiya Senda, Nobutaka Shimizu, Yoshifumi Nishimura
   Recent hybrid methods approach utilizing Biological Small Angle X-ray Scattering at the Photon Factory
   第58回日本生物物理学会年会, ( 2020 , 9 )
   B01:計画研究   B01 清水　伸隆  
9. Nobutaka Shimizu, Kento Yonezawa, Masatsuyo Takahashi, Keiko Yatabe, Yasuko Nagatani
   Current Status of BioSAXS at the Photon Factory
   第58回日本生物物理学会年会, ( 2020 , 9 )
   B01:計画研究   B01 清水　伸隆  
10. K. Yonezawa, M. Takahashi, K. Yatabe, Y. Nagatani, Y. Hayashi, S. Amano, H. Kamikubo, N. Shimizu
    Recent Progress Of BioSAXS Equipment For Complex Molecular Systems At The Photon Factory
    第20回日本タンパク質科学会年会, ( 2020 , 7 )
    B01:計画研究   B01 清水　伸隆  
11. 清水伸隆
    SEC-SAXS による分子間相互作用測定解析システム
    第33回日本放射光学会年会・放射光科学合同シンポジウム, ( 2020 , 1 )
    B01:計画研究   B01 清水　伸隆  
12. 米澤健人、林有吾、吉田桂人、天野真治、岡部龍二、清水伸隆、上久保裕生
    連続滴定 X 線溶液散乱測定を利用した分子複合系における多成分平衡状態の解析
    第33回日本放射光学会年会・放射光科学合同シンポジウム, ( 2020 , 1 )
    B01:計画研究   B01 清水　伸隆  
13. Shimizu, Nobutaka; Yonezawa, Kento; Takahashi, Masatuyo; Yatabe, Keiko, Nagatani, Yasuko
    BioSAXS experiment at the Photon Factory
    International Symposium on Diffraction Structural BIology 2019, ( 2019 , 10 )
    B01:計画研究   B01 清水　伸隆  
14. Nobutaka Shimizu, Kento Yonezawa, Masatsuyo Takahashi, Keiko Yatabe, Yasuko Nagatani
    Progress of Biological Small-Angle X-ray Scattering at the Photon Factory
    日本生物物理学会, ( 2019 , 9 )
    B01:計画研究   B01 清水　伸隆