Results

謝辞の記載についてAcknowledgement remarks

雑誌論文Papers

1. Miki Nakano, Osamu Miyashita, Yasumasa Joti, Akihiro Suzuki, Hideyuki Mitomo, Yoshiya Niida, Ying Yang, Hirokatsu Yumoto, Takahisa Koyama, Kensuke Tono, Haruhiko Ohashi, Makina Yabashi, Tetsuya Ishikawa, Yoshitaka Bessho, Kuniharu Ijiro, Yoshinori Nishino, Florence Tama
   Three-dimensional structure determination of gold nanotriangles in solution using X-ray free-electron laser single-particle analysis
   Optica , 9 , 7 , 776 (2022)
   DOI: https://doi.org/10.1364/optica.457352
   プレスリリース: https://www.riken.jp/press/2022/20220715_2/index.html
   A01:  C01:  B01:2022   A01 Yoshitaka Bessho  C01 Osamu Miyashita  B01 Akihiro Suzuki  
2. Hosaka T, Nomura T, Kubo M, Nakane T, Fangjia L, Sekine SI, Ito T, Murayama K, Ihara K, Ehara H, Kashiwagi K, Katsura K, Akasaka R, Hisano T, Tanaka T, Tanaka R, Arima T, Yamashita A, Sugahara M, Naitow H, Matsuura Y, Yoshizawa S, Tono K, Owada S, Nureki O, Kimura-Someya T, Iwata S, *Nango E, *Shirouzu M.
   Conformational alterations in unidirectional ion transport of a light-driven chloride pump revealed using X-ray free electron lasers
   Proc Natl Acad Sci U S A , 119 , 9 , e2117433119 (2022)
   DOI: https://doi.org/10.1073/pnas.2117433119
   プレスリリース: https://www.kyoto-u.ac.jp/ja/research-news/2022-02-28-2
   A01:  B01:  C01:  A01:2020   A01 So Iwata  B01 Eriko Nango  B01 Sigeki Owada  C01 Minoru Kubo  A01 Toshiaki Hosaka  
3. Tiwari, S. P., Tama, F. & Miyashita, O.
   Protocol for Retrieving Three-Dimensional Biological Shapes for a Few XFEL Single-Particle Diffraction Patterns.
   J Chem Inf Model , 61 , 8 , 4108-4119 (2021)
   DOI: https://doi.org/10.1021/acs.jcim.1c00602
   C01:   C01 Osamu Miyashita  
4. Dasgupta, B., Miyashita, O., Uchihashi, T. & Tama, F.
   Reconstruction of Three-Dimensional Conformations of Bacterial ClpB from High-Speed Atomic-Force-Microscopy Images.
   Front Mol Biosci , 8 , 704274 (2021)
   DOI: https://doi.org/10.3389/fmolb.2021.704274
   C01:   C01 Osamu Miyashita  
5. SP Tiwari, S Chhabra, *Tama F, *Miyashita O.
   Computational Protocol for Assessing the Optimal Pixel Size to Improve the Accuracy of Single-particle Cryo-electron Microscopy Maps
   J Chem Info Model , 60 , 5 , 2570-2580 (2020)
   DOI: 10.1021/acs.jcim.9b01107.
   C01:   C01 Osamu Miyashita  
6. Oda K, Nomura T, Nakane T, Yamashita K, Inoue K, Ito S, Vierock J, Hirata K, Maturana AD, Katayama K, Ikuta T, Ishigami I, Izume T, Umeda R, Eguma R, Oishi S, Kasuya G, Kato T, Kusakizako T, Shihoya W, Shimada H, Takatsuji T, Takemoto M, Taniguchi R, Tomita A, Nakamura R, Fukuda M, Miyauchi H, Lee Y, Nango E, Tanaka R, Tanaka T, Sugahara M, Kimura T, Shimamura T, Fujiwara T, Yamanaka Y, Owada S, Joti Y, Tono K, Ishitani R, Hayashi S, Kandori H, Hegemann P, Iwata S, Kubo M, Nishizawa T, Nureki O.
   Time-resolved serial femtosecond crystallography reveals early structural changes in channelrhodopsin
   elife , 23 , e62389 (2021)
   DOI: 10.7554/eLife.62389
   プレスリリース: https://www.s.u-tokyo.ac.jp/ja/press/2021/7284/
   A01:  B01:  C01:  A01:2020  C01:2020   A01 So Iwata  A01 Tsukasa Kusakizako  B01 Eriko Nango  B01 Sigeki Owada  C01 Minoru Kubo  C01 Tetsunari Kimura  A01 Wataru Shihoya  A01 Kota Katayama  C01 Shigehiko Hayashi  
7. Xue, S.-S., Li, X.-X., Lee, Y.-M., Seo, M. S., Kim, Y., Yanagisawa, S., Kubo, M., Jeon, Y.-K., Kim, W.-S., Sarangi, R., Kim, S. H., Fukuzumi, S., Nam, W.
   Enhanced redox reactivity of a nonheme iron(V)‒oxo complex binding protons.
   J. Am. Chem. Soc. , 142 , 36 , 15305-15319 (2020)
   DOI: https://doi.org/10.1021/jacs.0c05108
   C01:   C01 Minoru Kubo  
8. Fujieda, N., Umakoshi, K., Ochi, Y., Nishikawa, Y., Yanagisawa, S., Kubo, M., Kurisu, G., Itoh, S.
   Copper-oxygen dynamics in tyrosinase mechanism.
   Angew. Chem. Int. Ed. , 59 , 13385-13390 (2020)
   DOI: https://doi.org/10.1002/anie.202004733
   C01:   C01 Minoru Kubo  
9. Takeda, H., Kimura, T., Nomura, T., Horitani, M., Yokota, A., Matsubayashi, A., Ishii, S., Shiro, Y., Kubo, M., Tosha, T.
   Timing of NO Binding and Protonation in the Catalytic Reaction of Bacterial Nitric Oxide Reductase as Established by Time-Resolved Spectroscopy.
   Bull. Chem. Soc. Japan , 93 , 7 , 825-833 (2020)
   DOI: https://doi.org/10.1246/bcsj.20200038
   C01:  A01:2020   C01 Minoru Kubo  C01 Tetsunari Kimura  A01 Takehiko Tosha  
10. Suga, M., Akita, F., Yamashita, K., Nakajima, Y., Ueno, G., Li, H., Yamane, T., Hirata, K., Umena, Y., Yonekura, S., Yu, L.-J., Murakami, H., Nomura, T., Kimura, T., Kubo, M., Baba, S., Kumasaka, T., Tono, K., Yabashi, M., Isobe, H., Yamaguchi, K. Yamamoto, M., Ago, H., Shen, J.-R.
    An oxyl/oxo mechanism for oxygen-oxygen coupling in PSII revealed by an X-ray free electron laser.
    Science , 366 , 6463 , 334-338 (2019)
    DOI: 10.1126/science.aax6998
    A01:  B01:  C01:  A01:2020   A01 Yasufumi Umena  B01 Masaki Yamamoto  B01 Kumasaka Takashi  C01 Minoru Kubo  C01 Tetsunari Kimura  A01 Michihiro Suga  
11. Mitsuo Shoji, Yukihiro Abe, Mauro Boero, Yasuteru Shigeta and Yoshiaki Nishiya.
    Reaction Mechanism of Monomeric Sarcosine Oxidase with N-Cyclopropylglycine
    Phys Chem Chem Phys. , 22 , 29 , 16552-16561 (2020)
    DOI: https://doi.org/10.1039/D0CP01679A
    プレスリリース: https://www.ccs.tsukuba.ac.jp/release200730/
    C01:   C01 Mitsuo Shoji  
12. Kokubo, Y., Wasada-Tsutsui, Y., Yomura, S., Yanagisawa, S., Kubo, M., Kugimiya, S., Kajita, Y., Ozawa, T., Masuda, H.
    Syntheses, characterizations, and crystal Structures of dinitrogen-divanadium complexes bearing triamidoamine ligands.
    Eur. J. Inorg. Chem. , 2020 , 1456-1464 (2020)
    DOI: https://doi.org/10.1002/ejic.201901123
    C01:   C01 Minoru Kubo  
13. Kadoya, Y., Fukui, K., Hata, M., Miyano, R., Hitomi, Y., Yanagisawa, S., Kubo, M., Kodera, M.
    Oxidative DNA cleavage, formation of μ-1,1-hydroperoxo species, and cytotoxicity of dicopper(II) complex supported by a p-cresol-derived amide-tether ligand.
    Inorg. Chem. , 58 , (21) , 14294-14298 (2019)
    DOI: https://doi.org/10.1021/acs.inorgchem.9b02093
    C01:   C01 Minoru Kubo  
14. Kotani, H., Shimomura, H., Horimoto, M., Ishizuka, T., Shiota, Y., Yoshizawa, K., Yanagisawa, S., Kawahara-Nakagawa, Y., Kubo, M., Kojima, T.
    Fundamental electron-transfer and proton-coupled electron-transfer properties of Ru(IV)-oxo complexes.
    Dalton Trans. , 48 , (35) , 13154-13161 (2019)
    DOI: https://doi.org/10.1039/C9DT02734C
    C01:   C01 Minoru Kubo  
15. Wolff, A. M., Young, I. D., Sierra, R. G., Brewster, A. S., Martynowycz, M. W., Nango, E., Sugahara, M., Nakane, T., Ito, K., Aquila, A., Bhowmick, A., Biel, J. T., Carbajo, S., Cohen, A. E., Cortez, S., Gonzalez, A., Hino, T., Im, D., Koralek, J. D., Kubo, M., Lazarou, T. S., Nomura, T., Owada, S., Samelson, A. J., Tanaka, T., Tanaka, R., Thompson, E. M., van den Bedem, H., Woldeyes, R. A., Yumoto, F., Zhao, W., Tono, K., Boutet, S., Iwata, S., Gonen, T., Sauter, N. K., Fraser, J. S., Thompson, M. C.
    Comparing serial X-ray crystallography and microcrystal electron diffraction (MicroED) as methods for routine structure determination from small macromolecular crystals.
    IUCrJ , 7 , 2 , 306-323 (2020)
    DOI: https://doi.org/10.1107/S205225252000072X
    A01:  B01:  C01:  C01:2020   A01 So Iwata  B01 Eriko Nango  B01 Sigeki Owada  C01 Minoru Kubo  A01 Tomoya Hino  
16. Ashutosh Srivastava, Sandhya P Tiwari, Osamu Miyashita and Florence Tama
    Integrative/Hybrid Modeling Approaches for Studying Biomolecules
    Journal of Molecular Biology , In Press (2020)
    DOI: https://doi.org/10.1016/j.jmb.2020.01.039
    C01:   C01 Osamu Miyashita  

書籍Books

1. 溝端栄一、久保稔
   膜タンパク質工学ハンドブック 『構造・解析―X線自由電子レーザーによる膜タンパク質の構造解析』
   (株)エヌ・ティー・エス page: 11-15 (2020)
   A01:  C01:   A01 Eiichi Mizohata  C01 Minoru Kubo  

学会発表Presentations, Lectures

1. 久保稔
   XFEL結晶構造解析と振動分光法を用いたタンパク質の動的精密構造解析
   鳥取大学GSCセミナー, ( 2019 , 9 )
   C01:   C01 Minoru Kubo  
2. Osamu Miyashita
   Hybrid Approach for Structural Biology: Simulation and Experimental Data
   CBI Society Meeting, ( 2019 , 10 )
   C01:   C01 Osamu Miyashita