研究成果
Results list研究成果一覧
謝辞の記載についてAcknowledgement remarks
雑誌論文Papers
-
Miki Nakano, Osamu Miyashita, Yasumasa Joti, Akihiro Suzuki, Hideyuki Mitomo, Yoshiya Niida, Ying Yang, Hirokatsu Yumoto, Takahisa Koyama, Kensuke Tono, Haruhiko Ohashi, Makina Yabashi, Tetsuya Ishikawa, Yoshitaka Bessho, Kuniharu Ijiro, Yoshinori Nishino, Florence Tama
Three-dimensional structure determination of gold nanotriangles in solution using X-ray free-electron laser single-particle analysis
Optica , 9 , 7 , 776 (2022)
DOI: https://doi.org/10.1364/optica.457352
プレスリリース: https://www.riken.jp/press/2022/20220715_2/index.html
A01:計画研究 C01:計画研究 B01:2022年公募班 A01 別所 義隆 C01 宮下 治 B01 鈴木 明大 -
Hosaka T, Nomura T, Kubo M, Nakane T, Fangjia L, Sekine SI, Ito T, Murayama K, Ihara K, Ehara H, Kashiwagi K, Katsura K, Akasaka R, Hisano T, Tanaka T, Tanaka R, Arima T, Yamashita A, Sugahara M, Naitow H, Matsuura Y, Yoshizawa S, Tono K, Owada S, Nureki O, Kimura-Someya T, Iwata S, *Nango E, *Shirouzu M.
Conformational alterations in unidirectional ion transport of a light-driven chloride pump revealed using X-ray free electron lasers
Proc Natl Acad Sci U S A , 119 , 9 , e2117433119 (2022)
DOI: https://doi.org/10.1073/pnas.2117433119
プレスリリース: https://www.kyoto-u.ac.jp/ja/research-news/2022-02-28-2
A01:計画研究 B01:計画研究 C01:計画研究 A01:2020年公募班 A01 岩田 想 B01 南後 恵理子 B01 大和田 成起 C01 久保 稔 A01 保坂 俊彰 -
Tiwari, S. P., Tama, F. & Miyashita, O.
Protocol for Retrieving Three-Dimensional Biological Shapes for a Few XFEL Single-Particle Diffraction Patterns.
J Chem Inf Model , 61 , 8 , 4108-4119 (2021)
DOI: https://doi.org/10.1021/acs.jcim.1c00602
C01:計画研究 C01 宮下 治 -
Dasgupta, B., Miyashita, O., Uchihashi, T. & Tama, F.
Reconstruction of Three-Dimensional Conformations of Bacterial ClpB from High-Speed Atomic-Force-Microscopy Images.
Front Mol Biosci , 8 , 704274 (2021)
DOI: https://doi.org/10.3389/fmolb.2021.704274
C01:計画研究 C01 宮下 治 -
SP Tiwari, S Chhabra, *Tama F, *Miyashita O.
Computational Protocol for Assessing the Optimal Pixel Size to Improve the Accuracy of Single-particle Cryo-electron Microscopy Maps
J Chem Info Model , 60 , 5 , 2570-2580 (2020)
DOI: 10.1021/acs.jcim.9b01107.
C01:計画研究 C01 宮下 治 -
Oda K, Nomura T, Nakane T, Yamashita K, Inoue K, Ito S, Vierock J, Hirata K, Maturana AD, Katayama K, Ikuta T, Ishigami I, Izume T, Umeda R, Eguma R, Oishi S, Kasuya G, Kato T, Kusakizako T, Shihoya W, Shimada H, Takatsuji T, Takemoto M, Taniguchi R, Tomita A, Nakamura R, Fukuda M, Miyauchi H, Lee Y, Nango E, Tanaka R, Tanaka T, Sugahara M, Kimura T, Shimamura T, Fujiwara T, Yamanaka Y, Owada S, Joti Y, Tono K, Ishitani R, Hayashi S, Kandori H, Hegemann P, Iwata S, Kubo M, Nishizawa T, Nureki O.
Time-resolved serial femtosecond crystallography reveals early structural changes in channelrhodopsin
elife , 23 , e62389 (2021)
DOI: 10.7554/eLife.62389
プレスリリース: https://www.s.u-tokyo.ac.jp/ja/press/2021/7284/
A01:計画研究 B01:計画研究 C01:計画研究 A01:2020年公募班 C01:2020年公募班 A01 岩田 想 A01 草木迫 司 B01 南後 恵理子 B01 大和田 成起 C01 久保 稔 C01 木村 哲就 A01 志甫谷 渉 A01 片山 耕大 C01 林 重彦 -
Xue, S.-S., Li, X.-X., Lee, Y.-M., Seo, M. S., Kim, Y., Yanagisawa, S., Kubo, M., Jeon, Y.-K., Kim, W.-S., Sarangi, R., Kim, S. H., Fukuzumi, S., Nam, W.
Enhanced redox reactivity of a nonheme iron(V)‒oxo complex binding protons.
J. Am. Chem. Soc. , 142 , 36 , 15305-15319 (2020)
DOI: https://doi.org/10.1021/jacs.0c05108
C01:計画研究 C01 久保 稔 -
Fujieda, N., Umakoshi, K., Ochi, Y., Nishikawa, Y., Yanagisawa, S., Kubo, M., Kurisu, G., Itoh, S.
Copper-oxygen dynamics in tyrosinase mechanism.
Angew. Chem. Int. Ed. , 59 , 13385-13390 (2020)
DOI: https://doi.org/10.1002/anie.202004733
C01:計画研究 C01 久保 稔 -
Takeda, H., Kimura, T., Nomura, T., Horitani, M., Yokota, A., Matsubayashi, A., Ishii, S., Shiro, Y., Kubo, M., Tosha, T.
Timing of NO Binding and Protonation in the Catalytic Reaction of Bacterial Nitric Oxide Reductase as Established by Time-Resolved Spectroscopy.
Bull. Chem. Soc. Japan , 93 , 7 , 825-833 (2020)
DOI: https://doi.org/10.1246/bcsj.20200038
C01:計画研究 A01:2020年公募班 C01 久保 稔 C01 木村 哲就 A01 當舎 武彦 -
Suga, M., Akita, F., Yamashita, K., Nakajima, Y., Ueno, G., Li, H., Yamane, T., Hirata, K., Umena, Y., Yonekura, S., Yu, L.-J., Murakami, H., Nomura, T., Kimura, T., Kubo, M., Baba, S., Kumasaka, T., Tono, K., Yabashi, M., Isobe, H., Yamaguchi, K. Yamamoto, M., Ago, H., Shen, J.-R.
An oxyl/oxo mechanism for oxygen-oxygen coupling in PSII revealed by an X-ray free electron laser.
Science , 366 , 6463 , 334-338 (2019)
DOI: 10.1126/science.aax6998
A01:計画研究 B01:計画研究 C01:計画研究 A01:2020年公募班 A01 梅名 泰史 B01 山本 雅貴 B01 熊坂 崇 C01 久保 稔 C01 木村 哲就 A01 菅 倫寛 -
Mitsuo Shoji, Yukihiro Abe, Mauro Boero, Yasuteru Shigeta and Yoshiaki Nishiya.
Reaction Mechanism of Monomeric Sarcosine Oxidase with N-Cyclopropylglycine
Phys Chem Chem Phys. , 22 , 29 , 16552-16561 (2020)
DOI: https://doi.org/10.1039/D0CP01679A
プレスリリース: https://www.ccs.tsukuba.ac.jp/release200730/
C01:計画研究 C01 庄司 光男 -
Kokubo, Y., Wasada-Tsutsui, Y., Yomura, S., Yanagisawa, S., Kubo, M., Kugimiya, S., Kajita, Y., Ozawa, T., Masuda, H.
Syntheses, characterizations, and crystal Structures of dinitrogen-divanadium complexes bearing triamidoamine ligands.
Eur. J. Inorg. Chem. , 2020 , 1456-1464 (2020)
DOI: https://doi.org/10.1002/ejic.201901123
C01:計画研究 C01 久保 稔 -
Kadoya, Y., Fukui, K., Hata, M., Miyano, R., Hitomi, Y., Yanagisawa, S., Kubo, M., Kodera, M.
Oxidative DNA cleavage, formation of μ-1,1-hydroperoxo species, and cytotoxicity of dicopper(II) complex supported by a p-cresol-derived amide-tether ligand.
Inorg. Chem. , 58 , (21) , 14294-14298 (2019)
DOI: https://doi.org/10.1021/acs.inorgchem.9b02093
C01:計画研究 C01 久保 稔 -
Kotani, H., Shimomura, H., Horimoto, M., Ishizuka, T., Shiota, Y., Yoshizawa, K., Yanagisawa, S., Kawahara-Nakagawa, Y., Kubo, M., Kojima, T.
Fundamental electron-transfer and proton-coupled electron-transfer properties of Ru(IV)-oxo complexes.
Dalton Trans. , 48 , (35) , 13154-13161 (2019)
DOI: https://doi.org/10.1039/C9DT02734C
C01:計画研究 C01 久保 稔 -
Wolff, A. M., Young, I. D., Sierra, R. G., Brewster, A. S., Martynowycz, M. W., Nango, E., Sugahara, M., Nakane, T., Ito, K., Aquila, A., Bhowmick, A., Biel, J. T., Carbajo, S., Cohen, A. E., Cortez, S., Gonzalez, A., Hino, T., Im, D., Koralek, J. D., Kubo, M., Lazarou, T. S., Nomura, T., Owada, S., Samelson, A. J., Tanaka, T., Tanaka, R., Thompson, E. M., van den Bedem, H., Woldeyes, R. A., Yumoto, F., Zhao, W., Tono, K., Boutet, S., Iwata, S., Gonen, T., Sauter, N. K., Fraser, J. S., Thompson, M. C.
Comparing serial X-ray crystallography and microcrystal electron diffraction (MicroED) as methods for routine structure determination from small macromolecular crystals.
IUCrJ , 7 , 2 , 306-323 (2020)
DOI: https://doi.org/10.1107/S205225252000072X
A01:計画研究 B01:計画研究 C01:計画研究 C01:2020年公募班 A01 岩田 想 B01 南後 恵理子 B01 大和田 成起 C01 久保 稔 A01 日野 智也 -
Ashutosh Srivastava, Sandhya P Tiwari, Osamu Miyashita and Florence Tama
Integrative/Hybrid Modeling Approaches for Studying Biomolecules
Journal of Molecular Biology , In Press (2020)
DOI: https://doi.org/10.1016/j.jmb.2020.01.039
C01:計画研究 C01 宮下 治
書籍Books
-
溝端栄一、久保稔
膜タンパク質工学ハンドブック 『構造・解析―X線自由電子レーザーによる膜タンパク質の構造解析』
(株)エヌ・ティー・エス page: 11-15 (2020)
A01:計画研究 C01:計画研究 A01 溝端 栄一 C01 久保 稔